CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBN11744
(
Caenorhabditis brenneri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBN11744
T34025_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN11744
RRM
211
278
ARGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFASQESRDLALKRHRNFLLSRYIE
CBN11744
RRM
363
431
VRMRGLPYDCSDNQIRAFFEPLKLTEKILFITRTDGRPTGDAFVQFETEEDAQKGLLKHRHIIGQRYIE
CBN11744
RRM
546
606
PDFEVQHIVTFLGEYSSMVKFQGVHMVYNNQGHPSGEAFIQMISEQAAAATAAGVHNNFMC
Links
Other
RRM
family RBPs
Other
Caenorhabditis brenneri
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA16756
Caenorhabditis japonica
CJA16756
N
0.843
CRE05170
Caenorhabditis remanei
CRE05170
N
0.888
sym-2
Caenorhabditis elegans
ZK1067.6
N
0.851