CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCAFG00000018581
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000018581
T35183_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000027425
RRM
41
110
IFVGGIKEDPEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQ
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AMAG_03225
Allomyces macrogynus
AMAG_03225
N
0.000
CC1G_06273
Coprinopsis cinerea
CC1G_06273
N
0.000
DEHA0A05764g
Debaryomyces hansenii
DEHA0A05764g
N
0.000
estExt_fgenesh1_pg.C_130152
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_130152
N
0.000
estExt_fgenesh2_kg.C_71062
Serpula lacrymans
estExt_fgenesh2_kg.C_71062
N
0.000
estExt_Genewise1Plus.C_200094
Postia placenta
estExt_Genewise1Plus.C_200094
N
0.000
e_gw1.10.335.1
Mucor circinelloides
e_gw1.10.335.1
N
0.000
e_gw1.87.91.1
Postia placenta
e_gw1.87.91.1
N
0.000
fgenesh1_pg.C_scaffold_1000567
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_1000567
N
0.000
fgenesh1_pg.C_scaffold_4000265
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_4000265
N
0.000
fgeneshTM_pg.1_#_1063
Tremella mesenterica
fgeneshTM_pg.1_#_1063
N
0.000
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.000
gw1.11.214.1
Batrachochytrium dendrobatidis
gw1.11.214.1
N
0.000
PTRG_04434
Pyrenophora tritici repentis
PTRG_04434
N
0.000
RO3G_08088
Rhizopus oryzae
RO3G_08088
N
0.000
SOCG_03680
Schizosaccharomyces octosporus
SOCG_03680
N
0.000
SPPG_07834
Spizellomyces punctatus
SPPG_07834
N
0.000