CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PPIL4
(
Choloepus hoffmanni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCHOG00000000236
T35228_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000000206
RRM
229
284
XXIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIH
Links
Other
RRM
family RBPs
Other
Choloepus hoffmanni
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.000
AAI08588
Xenopus laevis
AAI08588
N
0.000
AAI34826
Xenopus laevis
AAI34826
N
0.000
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.000
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.000
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.000
ENSMODG00000003473
Monodelphis domestica
ENSMODG00000003473
N
0.000
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.000
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.000
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.000
ENSRNOG00000024645
Rattus norvegicus
ENSRNOG00000024645
N
0.000
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.000
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.000
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.000
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.000
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.000
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.000
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.000
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.000
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.000
HNRNPM
Otolemur garnettii
ENSOGAG00000003234
N
0.000
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.000
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.000
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.000
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.000
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.000
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.000
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.000
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.000
HNRNPM
Homo sapiens
ENSG00000099783
N
0.000
HNRNPM
Felis catus
ENSFCAG00000015218
N
0.000
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.000
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.000
hnrnpm
Xenopus tropicalis
ENSXETG00000001777
N
0.000
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.000
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.000
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.000
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.000
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.000
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.000
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.000
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.000
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.000
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.000
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.000
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.000
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.000
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.000
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.000
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.000
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.000
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.000
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.000
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.000
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.000
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.000
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.000
MYEF2
Homo sapiens
ENSG00000104177
N
0.000
myef2
Danio rerio
ENSDARG00000059398
N
0.000
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.000
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.000
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.000
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.000
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.000
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.000
Myef2
Mus musculus
ENSMUSG00000027201
N
0.000
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.000
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.000
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.000
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.000
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.000
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.000
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.000
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.000
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.000