CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
Fus
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000014218
T36530_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
FUS_CONSTRUCT
M018_0.6
RNAcompete CONSTRUCTS
CGCGC
RNAcompete
Ray et al.(2013)
RNCMPT00018
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000013369
RRM
276
354
IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fus
Danio rerio
ENSDARG00000037968
I
0.886
FUS
Myotis lucifugus
ENSMLUG00000004806
I
0.848
FUS
Vicugna pacos
ENSVPAG00000004211
I
1.000