CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF12
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000024850
T37922_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Fusip1
M088_0.6
Homo sapiens
AGAGAVV
RNAcompete
Ray et al.(2013)
RNCMPT00090
0.750
Fusip1
M087_0.6
Homo sapiens
AGAGARR
RNAcompete
Ray et al.(2013)
RNCMPT00089
0.750
Fusip1
M086_0.6
Homo sapiens
ARAGRRR
RNAcompete
Ray et al.(2013)
RNCMPT00088
0.750
Fusip1
M019_0.6
Homo sapiens
AGAGAVM
RNAcompete
Ray et al.(2013)
RNCMPT00019
0.750
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000023552
RRM
1
62
RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYLVIFEDVRDAEDALYNLNRKWVCGRQIE
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
72 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIBMGA004191
Bombyx mori
BGIBMGA004191
N
0.000
CG3800
Drosophila melanogaster
FBgn0034802
N
0.000
GA17695-RA
Drosophila pseudoobscura
FBgn0077705
N
0.000
nasonia_NCBI_hmm874383
Nasonia vitripennis
nasonia_NCBI_hmm874383
N
0.000
nasonia_NCBI_hmm876383
Nasonia vitripennis
nasonia_NCBI_hmm876383
N
0.000