CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF3
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000014306
T38916_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Rbp1
M336_0.6
Drosophila melanogaster
Sequence logo not available
AUCYNNA
SELEX
Cook et al.(2011)
804_7664738.1
0.712
Rbp1
M335_0.6
Drosophila melanogaster
Sequence logo not available
DCADCUUUA
SELEX
Cook et al.(2011)
804_7664738
0.712
Rbp1-like
M121_0.6
Drosophila melanogaster
AUCADCR
RNAcompete
Ray et al.(2013)
RNCMPT00127
0.712
Rbp1
M056_0.6
Drosophila melanogaster
WCAACRR
RNAcompete
Ray et al.(2013)
RNCMPT00058
0.712
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000018787
RRM
12
77
VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR
ENSMMUP00000018788
RRM
12
77
VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sjc_0051750
Schistosoma japonicum
Sjc_0051750
N
0.000