CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000001051
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000001051
T40426_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000001221
RRM
179
246
SQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLK
ENSPPYP00000001221
RRM
376
445
LFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIK
ENSPPYP00000001221
RRM
457
519
LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPD
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSDARG00000078930
Danio rerio
ENSDARG00000078930
N
0.000
SETD1B
Gasterosteus aculeatus
ENSGACG00000017002
N
0.000
SETD1B
Oryzias latipes
ENSORLG00000008435
N
0.000
SETD1B
Tetraodon nigroviridis
ENSTNIG00000009090
N
0.000
SETD1B
Takifugu rubripes
ENSTRUG00000009533
N
0.000
setd1ba
Danio rerio
ENSDARG00000060847
N
0.000