CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000014178
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000014178
T40545_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000015859
RRM
275
348
LYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMK
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
28611.m000102
Ricinus communis
28611.m000102
N
0.000
B9MWV7_POPTR
Populus trichocarpa
POPTR_0017s02120
N
0.000
BRADI2G43127
Brachypodium distachyon
BRADI2G43127
N
0.000
cassava30271.valid.m1
Manihot esculenta
cassava30271.valid.m1
N
0.000
cassava30272.valid.m1
Manihot esculenta
cassava30272.valid.m1
N
0.000
Cucsa.173560
Cucumis sativus
Cucsa.173560
N
0.000
fgenesh2_pg.C_scaffold_0000023
Selaginella moellendorfii
fgenesh2_pg.C_scaffold_0000023
N
0.000
Glyma08g35510.1
Glycine max
Glyma08g35510.1
N
0.000
Glyma16g18030.1
Glycine max
Glyma16g18030.1
N
0.000
GRMZM2G151614
Zea mays
GRMZM2G151614
N
0.000
GRMZM2G173777
Zea mays
GRMZM2G173777
N
0.000
GSVIVG00013204001
Vitis vinifera
GSVIVG00013204001
N
0.000
LOC_Os02g07070
Oryza sativa
LOC_Os02g07070
N
0.000
MDP0000122011
Malus x domestica
MDP0000122011
N
0.000
MDP0000184288
Malus x domestica
MDP0000184288
N
0.000
mgf004650m
Mimulus guttatus
mgf004650m
N
0.000
PDK_20s1789141g001
Phoenix dactylifera
PDK_20s1789141g001
N
0.000
POPTR_0004s08000
Populus trichocarpa
POPTR_0004s08000
N
0.000
ppa024223m
Prunus persica
ppa024223m
N
0.000
SB02G010740
Sorghum bicolor
Sb02g010740
N
0.000
SUA
Arabidopsis thaliana
AT3G54230-TAIR-G
N
0.000
XM_002876202.1
Arabidopsis lyrata
fgenesh2_kg.5__1812__AT3G54230.1
N
0.000