CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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C6orf52
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000008608
T42271_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000021591
RRM
8
78
LWMGDLDPYMEEDFIKQAFSAMGESPTGVKIITHKITGGSAGYCFVELADEASVERCVQRLNGKLVPGSNP
ENSTRUP00000021591
RRM
101
170
VFVGDLASDVQDFQLQQVFKNYPSCKGAKVVTDQYGYSRGYGFVKFGEESEQKKAIEECQGTMLSGKPLR
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
C6orf52
Gasterosteus aculeatus
ENSGACG00000014944
N
0.908
C6orf52
Oryzias latipes
ENSORLG00000013265
N
0.867
C6orf52
Tetraodon nigroviridis
ENSTNIG00000000916
N
0.929
ENSDARG00000056475
Danio rerio
ENSDARG00000056475
N
0.757