CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SCAF8
(
Tursiops truncatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTTRG00000014538
T42667_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000013785
RRM
469
534
LWVGQVDKKATQQDLTNVEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIK
Links
Other
RRM
family RBPs
Other
Tursiops truncatus
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSORLG00000004384
Oryzias latipes
ENSORLG00000004384
N
0.731
ENSTNIG00000009945
Tetraodon nigroviridis
ENSTNIG00000009945
N
0.716
ENSTRUG00000007792
Takifugu rubripes
ENSTRUG00000007792
N
0.731
SCAF4
Anolis carolinensis
ENSACAG00000002569
N
0.701
SCAF4
Danio rerio
ENSDARG00000018854
N
0.701
si:dkey-50p8.3
Danio rerio
ENSDARG00000077093
N
0.701