sm (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0003435 T42990_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sm
M067_0.6		 Drosophila melanogaster ABACACV RNAcompete
Ray et al.(2013)
RNCMPT00069 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M067_0.6 RRM 51 110
M067_0.6 RRM 204 266
M067_0.6 RRM 328 394

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0085681 RRM 90 149
FBpp0085681 RRM 243 305
FBpp0085681 RRM 367 433
FBpp0085684 RRM 172 234
FBpp0085684 RRM 296 362
FBpp0099612 RRM 90 149
FBpp0099612 RRM 243 305
FBpp0099612 RRM 367 433
FBpp0110198 RRM 28 90
FBpp0110198 RRM 152 218
FBpp0290824 RRM 90 149
FBpp0290824 RRM 248 310
FBpp0290824 RRM 372 438
FBpp0290825 RRM 188 250
FBpp0290825 RRM 312 378
FBpp0293195 RRM 232 294
FBpp0293195 RRM 356 422
FBpp0293196 RRM 90 149
FBpp0293196 RRM 303 365
FBpp0293196 RRM 427 493
FBpp0293197 RRM 90 149
FBpp0293197 RRM 260 322
FBpp0293197 RRM 384 450
FBpp0293198 RRM 90 149
FBpp0293198 RRM 265 327
FBpp0293198 RRM 389 455

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R000181 Ailuropoda melanoleuca Ame_R000181 N 0.000
ENSACAG00000003811 Anolis carolinensis ENSACAG00000003811 N 0.000
ENSLAFG00000004190 Loxodonta africana ENSLAFG00000004190 N 0.000
ENSMMUG00000003490 Macaca mulatta ENSMMUG00000003490 N 0.000
ENSPPYG00000012444 Pongo pygmaeus ENSPPYG00000012444 N 0.000
LOC100068692 Equus caballus ENSECAG00000013865 N 0.000
SRBD1 Oryctolagus cuniculus ENSOCUG00000015385 N 0.000
SRBD1 Pan troglodytes ENSPTRG00000011889 N 0.000
SRBD1 Pteropus vampyrus ENSPVAG00000001782 N 0.000
SRBD1 Sorex araneus ENSSARG00000009740 N 0.000
SRBD1 Spermophilus tridecemlineatus ENSSTOG00000005898 N 0.000
SRBD1 Tupaia belangeri ENSTBEG00000004556 N 0.000
SRBD1 Taeniopygia guttata ENSTGUG00000003878 N 0.000
SRBD1 Tarsius syrichta ENSTSYG00000012797 N 0.000
SRBD1 Tursiops truncatus ENSTTRG00000011871 N 0.000
SRBD1 Vicugna pacos ENSVPAG00000006825 N 0.000
srbd1 Xenopus tropicalis ENSXETG00000002760 N 0.000
Srbd1 Mus musculus ENSMUSG00000024135 N 0.000
SRBD1 Canis familiaris ENSCAFG00000002554 N 0.000
SRBD1 Choloepus hoffmanni ENSCHOG00000003805 N 0.000
SRBD1 Callithrix jacchus ENSCJAG00000000727 N 0.000
SRBD1 Cavia porcellus ENSCPOG00000004773 N 0.000
SRBD1 Dasypus novemcinctus ENSDNOG00000018686 N 0.000
Srbd1 Dipodomys ordii ENSDORG00000010468 N 0.000
SRBD1 Echinops telfairi ENSETEG00000000739 N 0.000
SRBD1 Homo sapiens ENSG00000068784 N 0.000
SRBD1 Gallus gallus ENSGALG00000009990 N 0.000
SRBD1 Gorilla gorilla ENSGGOG00000005910 N 0.000
SRBD1 Meleagris gallopavo ENSMGAG00000010273 N 0.000
SRBD1 Microcebus murinus ENSMICG00000007835 N 0.000
SRBD1 Bos taurus ENSBTAG00000007508 N 0.000
SRBD1 Myotis lucifugus ENSMLUG00000007039 N 0.000