CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_5200015
(
Capitella teleta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_5200015
T51287_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_5200015
RRM
3
73
LYVGSLHFNITEEMLRGIFDPFGKIDDIKLMKNHETGRSQGYGFITFHTAEDAKKALEQLNGFELAGRPMK
estExt_Genewise1.C_5200015
RRM
183
239
IQDDVIEECNKHGGVLHIYVDKASPQGNVYVKCPSISAAVASVNALHGRYFAGKVIT
Links
Other
RRM
family RBPs
Other
Capitella teleta
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG11266
Drosophila melanogaster
FBgn0031883
N
0.773
GL25979
Drosophila persimilis
FBgn0163563
N
0.797