CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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chr3.LjT39G24.170.nd
(
Lotus japonicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
chr3.LjT39G24.170.nd
T55867_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr3.LjT39G24.170.nd
RRM
66
122
WIMELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMK
Links
Other
RRM
family RBPs
Other
Lotus japonicus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE024244
Oryza indica
BGIOSIBCE024244
N
0.000
BRADI1G53620
Brachypodium distachyon
BRADI1G53620
N
0.000
GRMZM2G019251
Zea mays
GRMZM2G019251
N
0.000
GRMZM2G140352
Zea mays
GRMZM2G140352
N
0.000
LOC_Os07g13280
Oryza sativa
LOC_Os07g13280
N
0.000
SB02G007020
Sorghum bicolor
Sb02g007020
N
0.000