PDK_20s1346002g005 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1346002g005 T58082_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1346002g005 RRM 5 71

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29682.m000595 Ricinus communis 29682.m000595 N 0.746
30073.m002271 Ricinus communis 30073.m002271 N 0.761
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.776
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.721
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.746
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.710
BGIOSIBCE016670 Oryza indica BGIOSIBCE016670 N 0.731
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.821
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.821
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.706
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.739
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.768
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.725
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.791
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.791
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.806
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.866
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.710
LOC_Os04g53330 Oryza sativa LOC_Os04g53330 N 0.731
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.821
MDP0000177505 Malus x domestica MDP0000177505 N 0.701
MDP0000596287 Malus x domestica MDP0000596287 N 0.761
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.776
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.791
mgf007506m Mimulus guttatus mgf007506m N 0.821
mgf014593m Mimulus guttatus mgf014593m N 0.746
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.821
PK05006.1 Cannabis sativa PK05006.1 N 0.806
SB10G000940 Sorghum bicolor Sb10g000940 N 0.806
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.721