CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAR26262
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAR26262
T59664_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPN1
M148_0.6
Homo sapiens
ARAAGA
RNAcompete
Ray et al.(2013)
RNCMPT00157
0.971
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAR26262
RRM
165
234
IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
106 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT3G42360
Arabidopsis thaliana
AT3G42360-TAIR-G
N
0.000
ENSTNIG00000005451
Tetraodon nigroviridis
ENSTNIG00000005451
N
0.000
ENSTRUG00000009471
Takifugu rubripes
ENSTRUG00000009471
N
0.000
genemark.2333_g
Pleurotus ostreatus
genemark.2333_g
N
0.000
rbbp6l
Danio rerio
ENSDARG00000037919
N
0.000