CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1.C_100122
(
Postia placenta
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
estExt_Genewise1.C_100122
T61135_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.816
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_100122
S1
8
83
YPEVDELVMVQVRQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGRNEVVVVLRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Postia placenta
RBPs
267 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIBMGA004191
Bombyx mori
BGIBMGA004191
N
0.000
CG3800
Drosophila melanogaster
FBgn0034802
N
0.000
GA17695-RA
Drosophila pseudoobscura
FBgn0077705
N
0.000
nasonia_NCBI_hmm874383
Nasonia vitripennis
nasonia_NCBI_hmm874383
N
0.000
nasonia_NCBI_hmm876383
Nasonia vitripennis
nasonia_NCBI_hmm876383
N
0.000