CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.2.3184.1
(
Myceliophthora thermophila
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
gw1.2.3184.1
T61319_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.2.3184.1
S1
77
155
RPFKGEVIDAITQTVNPHGFFAQAGPLRLFVSSHLMPDEIQYDASATPAQFTNNADIVIEQGTHVRVRIIGLRTEVGEM
Links
Other
S1
family RBPs
Other
Myceliophthora thermophila
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_02847
Chaetomium globosum
CHGG_02847
N
0.987
estExt_fgenesh1_pm.C_190049
Neurospora tetrasperma
estExt_fgenesh1_pm.C_190049
N
0.750
estExt_Genewise1.C_40674
Trichoderma atroviride
estExt_Genewise1.C_40674
N
0.713
estExt_Genewise1.C_51123
Trichoderma virens
estExt_Genewise1.C_51123
N
0.713
estExt_Genewise1Plus.C_21572
Neurospora discreta
estExt_Genewise1Plus.C_21572
N
0.750
e_gw1.12.283.1
Trichoderma reesei
e_gw1.12.283.1
N
0.713
fgenesh2_pm.1_#_1569
Thielavia terrestris
fgenesh2_pm.1_#_1569
N
0.975
GLRG_01598
Colletotrichum graminicola
GLRG_01598
N
0.700
NCU02661
Neurospora crassa
NCU02661
N
0.750
Pa_1_16720
Podospora anserina
Pa_1_16720
N
0.700