CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RC3H2
(
Homo sapiens
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSG00000056586
T02626_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000335150
CCCH ZF
411
437
YKTSMCRDLRQQGGCPRGTNCTFAHSQ
ENSP00000349783
CCCH ZF
411
437
YKTSMCRDLRQQGGCPRGTNCTFAHSQ
ENSP00000362767
CCCH ZF
282
308
YKTSMCRDLRQQGGCPRGTNCTFAHSQ
ENSP00000362769
CCCH ZF
411
437
YKTSMCRDLRQQGGCPRGTNCTFAHSQ
ENSP00000362774
CCCH ZF
411
437
YKTSMCRDLRQQGGCPRGTNCTFAHSQ
ENSP00000411767
CCCH ZF
411
437
YKTSMCRDLRQQGGCPRGTNCTFAHSQ
Links
Other
CCCH ZF
family RBPs
Other
Homo sapiens
RBPs
95 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
mgf025192m
Mimulus guttatus
mgf025192m
N
0.000
SB01G029366
Sorghum bicolor
Sb01g029366
N
0.000
SB01G031795
Sorghum bicolor
Sb01g031795
N
0.000
SB06G012571
Sorghum bicolor
Sb06g012571
N
0.000
SB08G020705
Sorghum bicolor
Sb08g020705
N
0.000