B9H0X1_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0004s16880 T04021_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s16880.1 CCCH ZF 1087 1112

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

1 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017640 Ailuropoda melanoleuca Ame_R017640 N 0.000
APLF Anolis carolinensis ENSACAG00000000856 N 0.000
APLF_BOVIN Bos taurus ENSBTAG00000018401 N 0.000
APLF Callithrix jacchus ENSCJAG00000006460 N 0.000
APLF Canis familiaris ENSCAFG00000003262 N 0.000
APLF Cavia porcellus ENSCPOG00000003527 N 0.000
APLF Choloepus hoffmanni ENSCHOG00000013211 N 0.000
fgenesh1_pg.C_scaffold_4000233 Daphnia pulex fgenesh1_pg.C_scaffold_4000233 N 0.000
Aplf Dipodomys ordii ENSDORG00000011241 N 0.000
APLF Echinops telfairi ENSETEG00000019484 N 0.000
LOC100061683 Equus caballus ENSECAG00000013246 N 0.000
C2orf13 Gallus gallus ENSGALG00000008745 N 0.000
APLF Gorilla gorilla ENSGGOG00000034832 N 0.000
APLF Homo sapiens ENSG00000169621 N 0.000
APLF Loxodonta africana ENSLAFG00000011551 N 0.000
APLF Macaca mulatta ENSMMUG00000007552 N 0.000
APLF Monodelphis domestica ENSMODG00000003679 N 0.000
Aplf Mus musculus ENSMUSG00000030051 N 0.000
APLF Myotis lucifugus ENSMLUG00000005287 N 0.000
APLF Ornithorhynchus anatinus ENSOANG00000008393 N 0.000
APLF Oryctolagus cuniculus ENSOCUG00000006121 N 0.000
APLF Pan troglodytes ENSPTRG00000012004 N 0.000
ENSPPYG00000012348 Pongo pygmaeus ENSPPYG00000012348 N 0.000
APLF Procavia capensis ENSPCAG00000007756 N 0.000
APLF Sus scrofa ENSSSCG00000008346 N 0.000
APLF Takifugu rubripes ENSTRUG00000000975 N 0.000
APLF Tursiops truncatus ENSTTRG00000014570 N 0.000
aplf Xenopus tropicalis ENSXETG00000025938 N 0.000