CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R008666
(
Ailuropoda melanoleuca
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Ame_R008666
T05952_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R008666
CCCH ZF
258
268
QHCPYGKKCTY
Ame_R008666
CCCH ZF
263
278
GKKCTYGVKCKFYHPE
Links
Other
CCCH ZF
family RBPs
Other
Ailuropoda melanoleuca
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL011652
Aedes aegypti
AAEL011652
N
0.857
AGAP001272
Anopheles gambiae
AGAP001272
N
0.857
CpipJ_CPIJ001189
Culex pipiens
CpipJ_CPIJ001189
N
0.857
CPIJ001189
Culex quinquefasciatus
CPIJ001189
N
0.857
ZC3H12D
Echinops telfairi
ENSETEG00000016119
N
0.963
ZC3H12D
Gasterosteus aculeatus
ENSGACG00000006636
N
0.871
gw1.5.847.1
Lottia gigantea
gw1.5.847.1
N
0.821
ZC3H12D
Macropus eugenii
ENSMEUG00000004686
N
0.857
ZC3H12D
Monodelphis domestica
ENSMODG00000016829
N
0.926
ZC3H12D
Ochotona princeps
ENSOPRG00000014034
N
0.964
ZC3H12D
Oryzias latipes
ENSORLG00000015280
N
0.900
PHUM352150
Pediculus humanus
PHUM352150
N
0.786
ZC3H12D
Taeniopygia guttata
ENSTGUG00000010664
N
0.893
ZC3H12D
Tupaia belangeri
ENSTBEG00000000892
N
0.833