CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_12313
(
Neurospora discreta
)
CCHC ZF,KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00013 (KH_1)
IPR001878
IPR018111
estExt_Genewise1.C_12313
T07045_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_12313
KH
198
262
EKVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKAHMVATDYIYTEEKVNKAKKLI
estExt_Genewise1.C_12313
CCHC ZF
300
317
QACQNCGQIGHRKYDCPE
estExt_Genewise1.C_12313
CCHC ZF
325
342
IICRVCGNAGHMARDCPD
Links
Other
CCHC ZF,KH
family RBPs
Other
Neurospora discreta
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action