LOC100058690 (Equus caballus)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSECAG00000022940 T07235_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		1.000
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000020389 RRM 4 66
ENSECAP00000020389 RRM 80 142
ENSECAP00000020389 CCHC ZF 160 177

Links

Other CCHC ZF,RRM family RBPs
Other Equus caballus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava2439.valid.m1 Manihot esculenta cassava2439.valid.m1 N 0.000
cassava2440.valid.m1 Manihot esculenta cassava2440.valid.m1 N 0.000
B9I0Z4_POPTR Populus trichocarpa POPTR_0011s02640 N 0.000
ppa007255m Prunus persica ppa007255m N 0.000
GSVIVG00021437001 Vitis vinifera GSVIVG00021437001 N 0.000