CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PITG_22277
(
Phytophthora infestans
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PITG_22277
T08278_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PITG_22277T0
CCHC ZF
164
181
RRCYNCNEIGHIARNCPA
Links
Other
CCHC ZF
family RBPs
Other
Phytophthora infestans
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABG_04907
Paracoccidioides brasiliensis
PABG_04907
N
0.722
PABG_07362
Paracoccidioides brasiliensis
PABG_07362
N
0.722
PABG_07621
Paracoccidioides brasiliensis
PABG_07621
N
0.722
PABG_07827
Paracoccidioides brasiliensis
PABG_07827
N
0.722
PITG_07293
Phytophthora infestans
PITG_07293
N
0.833
Genemark.10729_g
Serpula lacrymans
Genemark.10729_g
N
0.722
Genemark.4174_g
Serpula lacrymans
Genemark.4174_g
N
0.722