CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
zcchc10
(
Xenopus tropicalis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSXETG00000004171
T10574_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000009053
CCHC ZF
21
38
VRCQKCLEMGHWSYECTG
Links
Other
CCHC ZF
family RBPs
Other
Xenopus tropicalis
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_01711
Puccinia graminis
PGTG_01711
N
0.000
PGTG_09249
Puccinia graminis
PGTG_09249
N
0.000
PTTG_02229
Puccinia triticina
PTTG_02229
N
0.000
PTTG_02329
Puccinia triticina
PTTG_02329
N
0.000
PTTG_05198
Puccinia triticina
PTTG_05198
N
0.000