CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG22940
(
Drosophila erecta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
FBgn0115097
T10629_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0141486
CCHC ZF
152
167
RCNKCKKSGHWIKNCP
Links
Other
CCHC ZF
family RBPs
Other
Drosophila erecta
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm4691
Apis mellifera
amel4_ncbi_hmm4691
N
0.706
GF11371
Drosophila ananassae
FBgn0088411
N
1.000
snama
Drosophila melanogaster
FBgn0086129
N
1.000
GL11666
Drosophila persimilis
FBgn0149275
N
0.938
GA16823-RA
Drosophila pseudoobscura
FBgn0076837
N
0.938
GM18306
Drosophila sechellia
FBgn0173213
N
1.000
GK21919
Drosophila willistoni
FBgn0223904
N
1.000
GE14378
Drosophila yakuba
FBgn0231986
N
1.000
nasonia_NCBI_hmm348274
Nasonia vitripennis
nasonia_NCBI_hmm348274
N
0.706