LOC_Os04g21560 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os04g21560 T11261_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g21560.1 CCHC ZF 357 374

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.000
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.000
estExt_fgenesh1_pg.C_70293 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_70293 N 0.000
PK22510.1 Cannabis sativa PK22510.1 N 0.000
estExt_Genewise1Plus.C_70089 Capitella teleta estExt_Genewise1Plus.C_70089 N 0.000
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
CNBG_5932 Cryptococcus neoformans CNBG_5932 N 0.000
Chro.30334 Cryptosporidium hominis Chro.30334 N 0.000
cgd3_2950 Cryptosporidium parvum cgd3_2950 N 0.000
CMR456C Cyanidioschyzon merolae CMR456C N 0.000
EDP43963.1 Malassezia globosa EDP43963.1 N 0.000
e_gw1.1.604.1 Mucor circinelloides e_gw1.1.604.1 N 0.000
eugene.0700010461 Ostreococcus lucimarinus eugene.0700010461 N 0.000
e_gw1.7.303.1 Ostreococcus RCC809 e_gw1.7.303.1 N 0.000
e_gw1.07.00.268.1 Ostreococcus tauri e_gw1.07.00.268.1 N 0.000
e_gwh2.2.654.1 Phanerochaete chrysosporium e_gwh2.2.654.1 N 0.000
e_gw1.10.100.1 Phycomyces blakesleeanus e_gw1.10.100.1 N 0.000
estExt_fgenesh3_pm.C_180006 Postia placenta estExt_fgenesh3_pm.C_180006 N 0.000
PTSG_07198 Salpingoeca rosetta PTSG_07198 N 0.000
SPPG_02913 Spizellomyces punctatus SPPG_02913 N 0.000
estExt_Genewise1Plus.C_20041 Sporobolomyces roseus estExt_Genewise1Plus.C_20041 N 0.000
e_gw1.7.291.1 Tremella mesenterica e_gw1.7.291.1 N 0.000
UM03241 Ustilago maydis UM03241 N 0.000
estExt_fgenesh4_pg.C_90052 Volvox carteri estExt_fgenesh4_pg.C_90052 N 0.000