CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
LOC_Os04g25040
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os04g25040
T11278_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os04g25040.1
CCHC ZF
646
663
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT1G35535
Arabidopsis thaliana
AT1G35535-TAIR-G
N
0.000
AT5G28675
Arabidopsis thaliana
AT5G28675-TAIR-G
N
0.000
AT4G09595
Arabidopsis thaliana
AT4G09595-TAIR-G
N
0.000
AT4G09425
Arabidopsis thaliana
AT4G09425-TAIR-G
N
0.000
AT4G05133
Arabidopsis thaliana
AT4G05133-TAIR-G
N
0.000
AT4G05073
Arabidopsis thaliana
AT4G05073-TAIR-G
N
0.000
AT3G43444
Arabidopsis thaliana
AT3G43444-TAIR-G
N
0.000
AT3G27327
Arabidopsis thaliana
AT3G27327-TAIR-G
N
0.000
AT2G21310
Arabidopsis thaliana
AT2G21310-TAIR-G
N
0.000
AT2G19840
Arabidopsis thaliana
AT2G19840-TAIR-G
N
0.000
AT2G13930
Arabidopsis thaliana
AT2G13930-TAIR-G
N
0.000
AT2G09830
Arabidopsis thaliana
AT2G09830-TAIR-G
N
0.000
AT2G06930
Arabidopsis thaliana
AT2G06930-TAIR-G
N
0.000
AT2G03100
Arabidopsis thaliana
AT2G03100-TAIR-G
N
0.000
AT1G48680
Arabidopsis thaliana
AT1G48680-TAIR-G
N
0.000
AT1G47360
Arabidopsis thaliana
AT1G47360-TAIR-G
N
0.000
AT5G57126
Arabidopsis thaliana
AT5G57126-TAIR-G
N
0.000