CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os05g16600
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os05g16600
T11393_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g16600.1
CCHC ZF
357
374
KLCFNCNKPGHTVGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LbrM06_V2.0050
Leishmania braziliensis
LbrM06_V2.0050
N
0.000
LinJ06_V3.0050
Leishmania infantum
LinJ06_V3.0050
N
0.000
LmjF06.0050
Leishmania major
LmjF06.0050
N
0.000