CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os07g16850
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g16850
T11772_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g16850.1
CCHC ZF
688
705
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R018370
Ailuropoda melanoleuca
Ame_R018370
I
0.000
A7MB38_BOVIN
Bos taurus
ENSBTAG00000013309
I
0.000
estExt_fgenesh2_pm.C_690014
Branchiostoma floridae
estExt_fgenesh2_pm.C_690014
I
0.000
LOC100402973
Callithrix jacchus
ENSCJAG00000009971
I
0.000
SRSF4
Cavia porcellus
ENSCPOG00000007263
I
0.000
estExt_Genewise1Plus.C_150169
Daphnia pulex
estExt_Genewise1Plus.C_150169
I
0.000
SRSF4
Dasypus novemcinctus
ENSDNOG00000000968
I
0.000
Srsf4
Dipodomys ordii
ENSDORG00000002459
I
0.000
SRSF4
Erinaceus europaeus
ENSEEUG00000008479
I
0.000
Q5ZKT4_CHICK
Gallus gallus
ENSGALG00000009484
I
0.000
SRSF4
Gasterosteus aculeatus
ENSGACG00000002389
I
0.000
ENSGACG00000011761
Gasterosteus aculeatus
ENSGACG00000011761
I
0.000
SRSF4
Homo sapiens
ENSG00000116350
I
0.000
SRSF4
Loxodonta africana
ENSLAFG00000002575
I
0.000
SRSF4
Macaca mulatta
ENSMMUG00000007110
I
0.000
SRSF4
Meleagris gallopavo
ENSMGAG00000002400
I
0.000
ENSMGAG00000011888
Meleagris gallopavo
ENSMGAG00000011888
I
0.000
SRSF4
Monodelphis domestica
ENSMODG00000011052
I
0.000
Srsf4
Mus musculus
ENSMUSG00000028911
I
0.000
SRSF4
Ochotona princeps
ENSOPRG00000010098
I
0.000
SRSF4
Oryctolagus cuniculus
ENSOCUG00000001837
I
0.000
SRSF5
Oryzias latipes
ENSORLG00000009268
I
0.000
SRSF4
Oryzias latipes
ENSORLG00000009430
I
0.000
SRSF4
Pan troglodytes
ENSPTRG00000000445
I
0.000
ENSPPYG00000001629
Pongo pygmaeus
ENSPPYG00000001629
I
0.000
SRSF4
Procavia capensis
ENSPCAG00000009879
I
0.000
Sfrs4
Rattus norvegicus
ENSRNOG00000010007
I
0.000
XP_001180940.1
Strongylocentrotus purpuratus
XP_001180940.1
I
0.000
XP_798746.1
Strongylocentrotus purpuratus
XP_798746.1
I
0.000
SRSF4
Sus scrofa
ENSSSCG00000003588
I
0.000
XP_002200515.1
Taeniopygia guttata
ENSTGUG00000011492
I
0.000
PACS2
Takifugu rubripes
ENSTRUG00000010740
I
0.000
SRSF4
Takifugu rubripes
ENSTRUG00000011891
I
0.000
SRSF4
Tarsius syrichta
ENSTSYG00000007903
I
0.000
SRSF4
Tetraodon nigroviridis
ENSTNIG00000005573
I
0.000
SRSF4
Tetraodon nigroviridis
ENSTNIG00000000115
I
0.000
SRSF4
Tursiops truncatus
ENSTTRG00000002572
I
0.000