CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os10g24420
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os10g24420
T12283_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os10g24420.1
CCHC ZF
674
691
RLCFNCYEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
636 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.000
CRE30341
Caenorhabditis remanei
CRE30341
N
0.000
CRE24570
Caenorhabditis remanei
CRE24570
N
0.000
CRE19609
Caenorhabditis remanei
CRE19609
N
0.000
CRE13664
Caenorhabditis remanei
CRE13664
N
0.000
CRE11513
Caenorhabditis remanei
CRE11513
N
0.000
CRE09693
Caenorhabditis remanei
CRE09693
N
0.000
CRE08346
Caenorhabditis remanei
CRE08346
N
0.000
CRE07474
Caenorhabditis remanei
CRE07474
N
0.000
CRE03622
Caenorhabditis remanei
CRE03622
N
0.000
CRE02565
Caenorhabditis remanei
CRE02565
N
0.000
CRE02519
Caenorhabditis remanei
CRE02519
N
0.000
PK07279.1
Cannabis sativa
PK07279.1
N
0.000