CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os12g19770
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os12g19770
T12541_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os12g19770.1
CCHC ZF
427
444
ELCFNCNKPGHTVGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI1G10760
Brachypodium distachyon
BRADI1G10760
N
0.000
BRADI1G51740
Brachypodium distachyon
BRADI1G51740
N
0.000
BRADI5G20150
Brachypodium distachyon
BRADI5G20150
N
0.000
PK05006.1
Cannabis sativa
PK05006.1
N
0.000
PK28591.1
Cannabis sativa
PK28591.1
N
0.000
Cucsa.322000
Cucumis sativus
Cucsa.322000
N
0.000
Glyma01g01950.1
Glycine max
Glyma01g01950.1
N
0.000
Glyma09g33960.1
Glycine max
Glyma09g33960.1
N
0.000
MDP0000320634
Malus x domestica
MDP0000320634
N
0.000
cassava25245.valid.m1
Manihot esculenta
cassava25245.valid.m1
N
0.000
cassava25244.valid.m1
Manihot esculenta
cassava25244.valid.m1
N
0.000
BGIOSIBCE012743
Oryza indica
BGIOSIBCE012743
N
0.000
BGIOSIBCE020376
Oryza indica
BGIOSIBCE020376
N
0.000
LOC_Os03g50560
Oryza sativa
LOC_Os03g50560
N
0.000
LOC_Os06g02240
Oryza sativa
LOC_Os06g02240
N
0.000
PDK_20s1373891g001
Phoenix dactylifera
PDK_20s1373891g001
N
0.000
PDK_20s1613681g001
Phoenix dactylifera
PDK_20s1613681g001
N
0.000
B9GZI4_POPTR
Populus trichocarpa
POPTR_0003s09410
N
0.000
A9PE83_POPTR
Populus trichocarpa
POPTR_0001s02090
N
0.000
ppa021083m
Prunus persica
ppa021083m
N
0.000
SB01G010170
Sorghum bicolor
Sb01g010170
N
0.000
SB10G000940
Sorghum bicolor
Sb10g000940
N
0.000
GSVIVG00024381001
Vitis vinifera
GSVIVG00024381001
N
0.000
GRMZM2G035719
Zea mays
GRMZM2G035719
N
0.000
GRMZM2G102808
Zea mays
GRMZM2G102808
N
0.000
GRMZM2G114789
Zea mays
GRMZM2G114789
N
0.000