ENSSSCG00000012830 (Sus scrofa)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSSSCG00000012830 T17020_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.817
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.817
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.750
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.750
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.750
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000013639 CSD 51 119

Links

Other CSD family RBPs
Other Sus scrofa RBPs

135 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.718
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.704
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.704
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.806
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.806
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.764
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.778
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.750
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.819
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.764
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.761
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.806
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.746
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.764
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.761
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.736
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.746
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.806
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.704
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.764
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.806
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.753
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.718
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.806
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.806
YBX2 Canis familiaris ENSCAFG00000016128 I 0.764
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.746
CSDA Cavia porcellus ENSCPOG00000011329 I 0.806
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.806
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.764
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.806
ybx1 Danio rerio ENSDARG00000004757 I 0.806
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.704
Csda Dipodomys ordii ENSDORG00000009103 I 0.806
CSDA Echinops telfairi ENSETEG00000002557 I 0.806
LOC100067336 Equus caballus ENSECAG00000023592 I 0.806
LOC100065107 Equus caballus ENSECAG00000013777 I 0.806
LOC100072964 Equus caballus ENSECAG00000009996 I 0.764
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.806
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.819
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.806
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.806
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.778
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.806
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.806
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.722
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.806
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.778
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.806
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.750
YBX2 Homo sapiens ENSG00000006047 D 0.750
CSDA Homo sapiens ENSG00000060138 I 0.806
YB-1 Homo sapiens ENSG00000065978 D 0.806
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.732
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.732
ISCW005281 Ixodes scapularis ISCW005281 I 0.718
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.746
CSDA Loxodonta africana ENSLAFG00000017247 I 0.806
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.806
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.764
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.764
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.806
CSDA Macaca mulatta ENSMMUG00000022469 I 0.806
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.806
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.806
YBX1 Microcebus murinus ENSMICG00000014984 I 0.806
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.764
CSDA Monodelphis domestica ENSMODG00000018248 I 0.792
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.750
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.806
Csda Mus musculus ENSMUSG00000030189 I 0.806
Ybx2 Mus musculus ENSMUSG00000018554 I 0.764
Ybx1 Mus musculus ENSMUSG00000028639 I 0.806
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.746
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.778
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.806
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.746
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.718
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.764
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.806
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.806
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.722
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.806
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.718
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.806
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.750
CSDA Pan troglodytes ENSPTRG00000004681 I 0.806
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.806
YBX2 Procavia capensis ENSPCAG00000008019 I 0.764
CSDA Procavia capensis ENSPCAG00000001397 I 0.736
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.806
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.806
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.732
Csda Rattus norvegicus ENSRNOG00000005480 I 0.806
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.778
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.764
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.792
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.806
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.750
YBX2 Sorex araneus ENSSARG00000000488 I 0.750
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.806
YBX2 Sus scrofa ENSSSCG00000017938 I 0.764
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.761
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.750
CSDA Sus scrofa ENSSSCG00000000633 I 0.806
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.806
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.806
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.806
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.708
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.704
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.806
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.708
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.704
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.764
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.806
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.743
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.806
P21574 Xenopus laevis P21574 I 0.764
P45441 Xenopus laevis P45441 I 0.750
P21573 Xenopus laevis P21573 I 0.806
CAA42778 Xenopus laevis CAA42778 I 0.806
ybx2-a Xenopus laevis AAI69706 D 0.764
AAI69704 Xenopus laevis AAI69704 I 0.764
AAI55915 Xenopus laevis AAI55915 I 0.764
AAI55914 Xenopus laevis AAI55914 I 0.750
AAI30161 Xenopus laevis AAI30161 I 0.806
AAI06324 Xenopus laevis AAI06324 I 0.806
AAH42217 Xenopus laevis AAH42217 I 0.806
AAH41191 Xenopus laevis AAH41191 I 0.806
AAA49924 Xenopus laevis AAA49924 I 0.750
AAA49716 Xenopus laevis AAA49716 I 0.764
AAA49715 Xenopus laevis AAA49715 I 0.806
Q00436 Xenopus laevis Q00436 I 0.806
csda Xenopus tropicalis ENSXETG00000016239 I 0.764
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.806