CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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E02D9.1
(
Caenorhabditis elegans
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
E02D9.1
T18392_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
E02D9.1b.1
KH
141
198
PNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSG
E02D9.1b.2
KH
141
198
PNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSG
E02D9.1b.3
KH
141
198
PNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSG
E02D9.1c
KH
141
198
PNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSG
Links
Other
KH
family RBPs
Other
Caenorhabditis elegans
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN02726
Caenorhabditis brenneri
CBN02726
N
0.875
CBN05623
Caenorhabditis brenneri
CBN05623
N
0.875
CBG12765
Caenorhabditis briggsae
CBG12765
N
1.000
CJA14405
Caenorhabditis japonica
CJA14405
N
0.966
CRE28190
Caenorhabditis remanei
CRE28190
N
0.931