CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GK12202
(
Drosophila willistoni
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0214213
T20011_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Fmr1
M015_0.6
Drosophila melanogaster
AHGGACR
RNAcompete
Ray et al.(2013)
RNCMPT00015
0.924
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0241345
KH
238
297
VEEFRVREDLMGLAIGSHGSNIQAARTLVGVTNIELEEKSCTFKISGETEESVQRARAML
FBpp0241345
KH
301
371
EEFFQVPRELVGKVIGKNGRIIQEIVDKSGVFRIKIAGDDEQDQNIPRELAHVPFVFIGTVESIANAKVLL
Links
Other
KH
family RBPs
Other
Drosophila willistoni
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL009326
Aedes aegypti
AAEL009326
I
0.771
amel4_ncbi_hmm37854
Apis mellifera
amel4_ncbi_hmm37854
I
0.740
CpipJ_CPIJ019402
Culex pipiens
CpipJ_CPIJ019402
I
0.756
CPIJ019402
Culex quinquefasciatus
CPIJ019402
I
0.756
estExt_fgenesh1_pg.C_690020
Daphnia pulex
estExt_fgenesh1_pg.C_690020
N
0.718
GF17134
Drosophila ananassae
FBgn0094153
I
0.992
GG17303
Drosophila erecta
FBgn0109530
I
0.992
Fmr1
Drosophila melanogaster
FBgn0028734
D
0.977
GI24444
Drosophila mojavensis
FBgn0147166
I
0.977
GM26187
Drosophila sechellia
FBgn0181042
I
0.977
GD20735
Drosophila simulans
FBgn0192201
I
0.977
GJ10720
Drosophila virilis
FBgn0197997
I
0.977
GE24705
Drosophila yakuba
FBgn0241810
I
0.992
nasonia_NCBI_hmm462784
Nasonia vitripennis
nasonia_NCBI_hmm462784
I
0.756
PHUM440700
Pediculus humanus
PHUM440700
I
0.733