CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SB01G022040
(
Sorghum bicolor
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Sb01g022040
T20265_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb01g022040.1
KH
56
112
VFRMLIPAQKVGVIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVIIFGREQPEE
Sb01g022040.1
KH
143
209
VRRILVPSEQAESLIGEHGVMINSIMEASQTDIRVLDGDLPPVALEEDRVVEIWGLPARVHKALELV
Sb01g022040.1
KH
474
534
KKKMQVPIFYAEAVIGPAGERIEYIRRTSRSNILISNSDGAMSIEITGNAATDVLTAEQLI
Links
Other
KH
family RBPs
Other
Sorghum bicolor
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma09g32500.1
Glycine max
Glyma09g32500.1
N
0.000
MDP0000462264
Malus x domestica
MDP0000462264
N
0.000
MDP0000244800
Malus x domestica
MDP0000244800
N
0.000
MDP0000457070
Malus x domestica
MDP0000457070
N
0.000
mgf010847m
Mimulus guttatus
mgf010847m
N
0.000
BGIOSIBCE021749
Oryza indica
BGIOSIBCE021749
N
0.000
LOC_Os06g22700
Oryza sativa
LOC_Os06g22700
N
0.000
PDK_20s13009459g001
Phoenix dactylifera
PDK_20s13009459g001
N
0.000
ppa007541m
Prunus persica
ppa007541m
N
0.000
GSVIVG00015362001
Vitis vinifera
GSVIVG00015362001
N
0.000
GRMZM2G111907
Zea mays
GRMZM2G111907
N
0.000