fgenesh1_pm.C_scaffold_76000004 (Capitella teleta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh1_pm.C_scaffold_76000004 T21096_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_76000004 KH 3 63
fgenesh1_pm.C_scaffold_76000004 KH 86 149
fgenesh1_pm.C_scaffold_76000004 KH 268 330

Links

Other KH family RBPs
Other Capitella teleta RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s5532g9t1 Acyrtosiphon pisum DGIL_AUG5s5532g9t1 I 0.708
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.735
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.735
AGAP004942 Anopheles gambiae AGAP004942 N 0.728
amel4_ncbi_hmm16330 Apis mellifera amel4_ncbi_hmm16330 I 0.712
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.725
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.766
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.766
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.735
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.735
PASA_GEN_0700132 Daphnia pulex PASA_GEN_0700132 I 0.717
GG16232 Drosophila erecta FBgn0108467 N 0.712
GH14429 Drosophila grimshawi FBgn0121905 N 0.712
FBgn0262737 Drosophila melanogaster FBgn0262737 N 0.712
GI13561 Drosophila mojavensis FBgn0136316 N 0.712
GA20351-RA Drosophila pseudoobscura FBgn0080346 N 0.712
GJ11921 Drosophila virilis FBgn0199174 N 0.712
GK10610 Drosophila willistoni FBgn0212625 N 0.712
GE22592 Drosophila yakuba FBgn0239809 N 0.712
LOC100050101 Equus caballus ENSECAG00000012413 I 0.735
PCBP3 Gallus gallus ENSGALG00000004394 I 0.714
PCBP3 Gallus gallus ENSGALG00000013155 I 0.741
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.730
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.730
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.735
PCBP3 Homo sapiens ENSG00000183570 I 0.735
ISCW016289 Ixodes scapularis ISCW016289 I 0.782
e_gw1.66.95.1 Lottia gigantea e_gw1.66.95.1 N 0.713
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.735
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.725
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.735
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.735
nasonia_NCBI_hmm938274 Nasonia vitripennis nasonia_NCBI_hmm938274 I 0.754
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.735
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.700
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.735
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.735
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.735
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.725
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.730
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.730
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.735