CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pm.C_scaffold_76000004
(
Capitella teleta
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
fgenesh1_pm.C_scaffold_76000004
T21096_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.735
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_76000004
KH
3
63
TLRMIMQGKEAGSIIGKKGDNVKKFREDSGAKINISDSSCPERIVTVTGTTDQIFKAFTMI
fgenesh1_pm.C_scaffold_76000004
KH
86
149
TLRLIVPASQCGSLIGKGGAKIKEIRELTGASIQVASEMLPNSTERAVTVSGQADAITQCIYNI
fgenesh1_pm.C_scaffold_76000004
KH
268
330
THEMTIPNDLIGCIIGRGGAKINEIRQLSGATIKIANADEGSSDRKVTIMGSLETIHAAQYMI
Links
Other
KH
family RBPs
Other
Capitella teleta
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Smp_082280
Schistosoma mansoni
Smp_082280
N
0.000