CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PITG_07306
(
Phytophthora infestans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PITG_07306
T30148_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PITG_07306T0
RRM
88
158
LFVARLSFSTAESTILQFFSNYGPIRRLRLVRDKKTDQSKGYAFVEFEHERDFGRAYRHAHRRVIDGATLL
Links
Other
RRM
family RBPs
Other
Phytophthora infestans
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_30072
Phytophthora capsici
estExt_Genewise1Plus.C_30072
N
0.746
gwEuk.22.68.1
Phytophthora ramorum
gwEuk.22.68.1
N
0.761
s_466494
Phytophthora sojae
s_466494
N
0.722