CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG11180
(
Caenorhabditis briggsae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBG11180
T33901_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG11180
RRM
36
100
VHVRNLHQKVTEADLLEALSTFGPIAYATCIPHSRMALVEFENLDGAKACVNYAATNNVTVGGQA
CBG11180
RRM
125
192
LVVTVLNATYPIDADVIHTISSSQGKVLRVAVMHKPTVVQALVEFESVEVAKAAKHAMNGADIYAGCC
CBG11180
RRM
314
380
MMVYGLDHDKINCDMLFNILCQYGNVLRISFMRTKTETGIIEMGQPNQRQDVLDHLQGTELCGLKLE
CBG11180
RRM
438
500
NAPGTMDEAKLLDMIAEKSHHKPIKVEVFPSRNERSAAGTVEFDTVEAANEVLALVNHSPVES
Links
Other
RRM
family RBPs
Other
Caenorhabditis briggsae
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN06779
Caenorhabditis brenneri
CBN06779
N
0.785
C44B7.2
Caenorhabditis elegans
C44B7.2
N
0.795
CJA09654
Caenorhabditis japonica
CJA09654
N
0.735