RBFOX3 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000009563 T35564_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.928
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.928
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.928
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.870
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000017588 RRM 121 189
ENSCJAP00000017598 RRM 101 169
ENSCJAP00000017606 RRM 101 169
ENSCJAP00000031956 RRM 101 169

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

154 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgeneshEH_pg.46__122 Emiliania huxleyi fgeneshEH_pg.46__122 N 0.000