CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TNRC6B
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000004573
T37425_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000006049
RRM
1546
1610
LVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGTALIRYSTKQEAAKAQSALHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
114 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT3G28315
Arabidopsis thaliana
AT3G28315-TAIR-G
N
0.000
AT3G60170
Arabidopsis thaliana
AT3G60170-TAIR-G
N
0.000
AT5G45116
Arabidopsis thaliana
AT5G45116-TAIR-G
N
0.000
BGIBMGA012989
Bombyx mori
BGIBMGA012989
N
0.000
PMAA_015550
Penicillium marneffei
PMAA_015550
N
0.000
GSVIVG00028612001
Vitis vinifera
GSVIVG00028612001
N
0.000