CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000018709
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000018709
T40590_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000020985
RRM
38
107
IFVGGIKEDTEEHHLRDYFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIQKHYTVNGHNCE
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000221204
Malus x domestica
MDP0000221204
N
0.000
MDP0000130613
Malus x domestica
MDP0000130613
N
0.000
estExt_Genewise1.C_80450
Myceliophthora thermophila
estExt_Genewise1.C_80450
N
0.000
NCU07041
Neurospora crassa
NCU07041
N
0.000
estExt_Genewise1Plus.C_120457
Neurospora discreta
estExt_Genewise1Plus.C_120457
N
0.000
estExt_Genewise1.C_250056
Neurospora tetrasperma
estExt_Genewise1.C_250056
N
0.000
PFB0370c
Plasmodium falciparum
PFB0370c
N
0.000
PKH_041180
Plasmodium knowlesi
PKH_041180
N
0.000
PredSwiss_ASS2010_156.1
Pneumocystis carinii
PredSwiss_ASS2010_156.1
N
0.000
Pa_1_24010
Podospora anserina
Pa_1_24010
N
0.000
estExt_fgenesh2_pm.C_40064
Thielavia terrestris
estExt_fgenesh2_pm.C_40064
N
0.000