ENSSSCG00000010685 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000010685 T41472_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TIA1
M156_0.6 		Homo sapiens WUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00165 		0.893
TIA1
M075_0.6 		Homo sapiens UUUUUBK RNAcompete
Ray et al.(2013)
RNCMPT00077 		0.893
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000011384 RRM 11 79
ENSSSCP00000011384 RRM 99 169
ENSSSCP00000011384 RRM 207 271

Links

Other RRM family RBPs
Other Sus scrofa RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R002705 Ailuropoda melanoleuca Ame_R002705 I 0.893
ENSACAG00000009648 Anolis carolinensis ENSACAG00000009648 I 0.898
TIAL1 Anolis carolinensis ENSACAG00000016986 I 0.980
A1A4R7_BOVIN Bos taurus ENSBTAG00000004080 I 1.000
Q0VBZ6_BOVIN Bos taurus ENSBTAG00000019182 I 0.898
gw.406.24.1 Branchiostoma floridae gw.406.24.1 I 0.771
estExt_fgenesh2_pg.C_1430023 Branchiostoma floridae estExt_fgenesh2_pg.C_1430023 I 0.776
TIAL1 Callithrix jacchus ENSCJAG00000019682 I 0.923
TIA1 Callithrix jacchus ENSCJAG00000019278 I 0.893
TIAL1 Canis familiaris ENSCAFG00000012171 I 0.923
TIA1 Canis familiaris ENSCAFG00000003341 I 0.893
TIA1 Cavia porcellus ENSCPOG00000008327 I 0.893
tial1 Danio rerio ENSDARG00000009525 I 0.941
tia1l Danio rerio ENSDARG00000026476 I 0.859
tia1 Danio rerio ENSDARG00000052536 I 0.849
TIAL1 Dasypus novemcinctus ENSDNOG00000009552 I 0.812
TIA1 Dasypus novemcinctus ENSDNOG00000016356 I 0.893
Tia1 Dipodomys ordii ENSDORG00000008601 I 0.829
Tial1 Dipodomys ordii ENSDORG00000010683 I 0.869
TIA1 Echinops telfairi ENSETEG00000010021 I 0.893
TIAL1 Equus caballus ENSECAG00000009970 I 1.000
Q800W4_CHICK Gallus gallus ENSGALG00000013879 I 0.893
Q800W1_CHICK Gallus gallus ENSGALG00000009427 I 0.923
TIA1 Gasterosteus aculeatus ENSGACG00000015800 I 0.844
TIAL1 Gasterosteus aculeatus ENSGACG00000003365 I 0.903
TIA1 Gasterosteus aculeatus ENSGACG00000013294 I 0.800
TIAL1 Gorilla gorilla ENSGGOG00000001816 I 0.789
TIA1 Homo sapiens ENSG00000116001 D 0.893
TIAL1 Homo sapiens ENSG00000151923 D 1.000
TIA1 Loxodonta africana ENSLAFG00000003463 I 0.898
TIA1 Macaca mulatta ENSMMUG00000001126 I 0.893
TIAL1 Macaca mulatta ENSMMUG00000001472 I 1.000
TIAL1 Macropus eugenii ENSMEUG00000013120 N 0.737
TIA1 Meleagris gallopavo ENSMGAG00000003493 I 0.888
TIA1 Monodelphis domestica ENSMODG00000011515 I 0.898
TIAL1 Monodelphis domestica ENSMODG00000008865 I 0.923
Tia1 Mus musculus ENSMUSG00000071337 I 0.898
Tial1 Mus musculus ENSMUSG00000030846 I 1.000
TIAL1 Ochotona princeps ENSOPRG00000016546 I 0.797
TIAL1 Ornithorhynchus anatinus ENSOANG00000004896 I 0.859
TIAL1 Oryctolagus cuniculus ENSOCUG00000003783 I 0.995
TIA1 Oryctolagus cuniculus ENSOCUG00000011204 I 0.893
TIA1 Oryzias latipes ENSORLG00000002529 I 0.854
TIA1 Oryzias latipes ENSORLG00000015642 I 0.863
TIAL1 Oryzias latipes ENSORLG00000013798 I 0.888
TIA1 Otolemur garnettii ENSOGAG00000010572 I 0.893
TIAL1 Pan troglodytes ENSPTRG00000002996 I 0.923
TIA1 Pan troglodytes ENSPTRG00000023495 I 0.893
ENSPPYG00000002703 Pongo pygmaeus ENSPPYG00000002703 I 0.923
ENSPPYG00000012326 Pongo pygmaeus ENSPPYG00000012326 I 0.878
TIAL1 Procavia capensis ENSPCAG00000003192 I 0.919
TIAL1 Pteropus vampyrus ENSPVAG00000017585 I 0.919
TIA1 Pteropus vampyrus ENSPVAG00000004846 I 0.893
Tial1 Rattus norvegicus ENSRNOG00000020271 I 0.923
Tia1 Rattus norvegicus ENSRNOG00000016813 I 0.893
TIA1 Sorex araneus ENSSARG00000001997 I 0.756
TIA1 Taeniopygia guttata ENSTGUG00000017307 I 0.863
TIA1 Takifugu rubripes ENSTRUG00000005456 I 0.844
TIA1 Takifugu rubripes ENSTRUG00000015136 I 0.854
TIAL1 Takifugu rubripes ENSTRUG00000017931 I 0.800
TIAL1 Tarsius syrichta ENSTSYG00000004348 I 0.923
TIA1 Tetraodon nigroviridis ENSTNIG00000013470 I 0.844
TIA1 Tetraodon nigroviridis ENSTNIG00000011433 I 0.854
TIAL1 Tetraodon nigroviridis ENSTNIG00000013091 I 0.708
ENSTBEG00000017228 Tupaia belangeri ENSTBEG00000017228 I 0.805
TIAL1 Tursiops truncatus ENSTTRG00000014574 I 0.793
TIA1 Tursiops truncatus ENSTTRG00000001195 I 0.893
TIAL1 Vicugna pacos ENSVPAG00000001240 I 0.878
TIA1 Vicugna pacos ENSVPAG00000007449 I 0.722
AAH77169 Xenopus laevis AAH77169 I 0.863
AAH80105 Xenopus laevis AAH80105 I 0.868
CAC95018 Xenopus laevis CAC95018 I 0.863
tia1 Xenopus tropicalis ENSXETG00000008514 I 0.873