CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSSSCG00000013561
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000013561
T41506_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.797
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000014410
RRM
9
78
LFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVA
ENSSSCP00000014410
RRM
100
167
LFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQ
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gm1.9100041
Emiliania huxleyi
gm1.9100041
N
0.000