CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRUNOL4
(
Taeniopygia guttata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTGUG00000001649
T41857_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.886
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000001700
RRM
11
79
LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS
ENSTGUP00000001700
RRM
278
348
LFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Taeniopygia guttata
RBPs
60 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_065340
Aspergillus clavatus
CADACLAG00006280
N
0.000
AFLA_071360
Aspergillus flavus
CADAFLAG00008560
N
0.000
ANIA_09093
Aspergillus nidulans
CADANIAG00009521
N
0.000
An12g00470
Aspergillus niger
CADANGAG00009496
N
0.000
BDBG_04011
Blastomyces dermatitidis
BDBG_04011
N
0.000
PGUG_03386
Candida guilliermondii
PGUG_03386
N
0.000
CHGG_08408
Chaetomium globosum
CHGG_08408
N
0.000
CIMG_07760
Coccidioides immitis
CIMG_07760
N
0.000
CPSG_09335
Coccidioides posadasii
CPSG_09335
N
0.000
GLRG_03550
Colletotrichum graminicola
GLRG_03550
N
0.000
FGSG_02646
Fusarium graminearum
FGSG_02646
N
0.000
FOXG_10630
Fusarium oxysporum
FOXG_10630
N
0.000
FVEG_09277
Fusarium verticillioides
FVEG_09277
N
0.000
NFIA_114910
Neosartorya fischeri
CADNFIAG00010575
N
0.000
NCU05800
Neurospora crassa
NCU05800
N
0.000
Pc21g11940
Penicillium chrysogenum
Pc21g11940
N
0.000
PMAA_010720
Penicillium marneffei
PMAA_010720
N
0.000
EAT81312.1
Phaeosphaeria nodorum
EAT81312.1
N
0.000
Pa_4_790
Podospora anserina
Pa_4_790
N
0.000
PTRG_04809
Pyrenophora tritici repentis
PTRG_04809
N
0.000
SNOG_11604
Stagonospora nodorum
SNOG_11604
N
0.000