CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CELF3
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000012064
T42327_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.807
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000030511
RRM
1
33
LSPGCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030511
RRM
52
120
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030511
RRM
351
421
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030512
RRM
1
33
LSPGCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030512
RRM
52
120
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030512
RRM
275
345
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030513
RRM
49
117
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030513
RRM
334
404
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030514
RRM
1
30
GCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030514
RRM
58
126
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030514
RRM
317
355
QQPQQLQQREGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
107 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh3_pg.105__14
Postia placenta
fgenesh3_pg.105__14
N
0.000
fgenesh3_pg.326__2
Postia placenta
fgenesh3_pg.326__2
N
0.000
fgenesh3_pg.348__2
Postia placenta
fgenesh3_pg.348__2
N
0.000
fgenesh3_pg.359__1
Postia placenta
fgenesh3_pg.359__1
N
0.000
fgenesh3_pg.44__55
Postia placenta
fgenesh3_pg.44__55
N
0.000
fgenesh3_pg.49__68
Postia placenta
fgenesh3_pg.49__68
N
0.000
fgenesh3_pg.51__8
Postia placenta
fgenesh3_pg.51__8
N
0.000
fgenesh3_pg.53__89
Postia placenta
fgenesh3_pg.53__89
N
0.000
fgenesh3_pg.63__75
Postia placenta
fgenesh3_pg.63__75
N
0.000
fgenesh3_pg.647__1
Postia placenta
fgenesh3_pg.647__1
N
0.000
fgenesh3_pg.66__60
Postia placenta
fgenesh3_pg.66__60
N
0.000
fgenesh3_pg.7__151
Postia placenta
fgenesh3_pg.7__151
N
0.000
fgenesh3_pg.77__33
Postia placenta
fgenesh3_pg.77__33
N
0.000
fgenesh3_pg.89__23
Postia placenta
fgenesh3_pg.89__23
N
0.000
fgenesh3_pg.900__1
Postia placenta
fgenesh3_pg.900__1
N
0.000
fgenesh3_pg.9__147
Postia placenta
fgenesh3_pg.9__147
N
0.000
fgenesh3_pg.2__92
Postia placenta
fgenesh3_pg.2__92
N
0.000
fgenesh3_pg.282__8
Postia placenta
fgenesh3_pg.282__8
N
0.000
fgenesh3_pg.266__9
Postia placenta
fgenesh3_pg.266__9
N
0.000
fgenesh3_pg.10__6
Postia placenta
fgenesh3_pg.10__6
N
0.000
fgenesh3_pg.107__20
Postia placenta
fgenesh3_pg.107__20
N
0.000
fgenesh3_pg.11__132
Postia placenta
fgenesh3_pg.11__132
N
0.000
fgenesh3_pg.116__47
Postia placenta
fgenesh3_pg.116__47
N
0.000
fgenesh3_pg.11__80
Postia placenta
fgenesh3_pg.11__80
N
0.000
fgenesh3_pg.121__36
Postia placenta
fgenesh3_pg.121__36
N
0.000
fgenesh3_pg.136__2
Postia placenta
fgenesh3_pg.136__2
N
0.000
fgenesh3_pg.150__7
Postia placenta
fgenesh3_pg.150__7
N
0.000
fgenesh3_pg.178__10
Postia placenta
fgenesh3_pg.178__10
N
0.000
fgenesh3_pg.19__17
Postia placenta
fgenesh3_pg.19__17
N
0.000
fgenesh3_pg.19__42
Postia placenta
fgenesh3_pg.19__42
N
0.000
fgenesh3_pg.194__2
Postia placenta
fgenesh3_pg.194__2
N
0.000
fgenesh3_pg.202__23
Postia placenta
fgenesh3_pg.202__23
N
0.000
fgenesh3_pg.223__10
Postia placenta
fgenesh3_pg.223__10
N
0.000
fgenesh3_pg.264__1
Postia placenta
fgenesh3_pg.264__1
N
0.000
fgenesh3_pg.9__2
Postia placenta
fgenesh3_pg.9__2
N
0.000