CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GK15699
(
Drosophila willistoni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0217702
T44189_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
sm
M067_0.6
Drosophila melanogaster
ABACACV
RNAcompete
Ray et al.(2013)
RNCMPT00069
0.979
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0244842
RRM
93
152
PFYPITVDVLHKICNPHGQVLRIVIFKKNGVQAMVEFDSLDAATRARENLNGADIYAGCC
FBpp0244842
RRM
246
308
MMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDSVAVERCVQHLNNIPVGT
FBpp0244842
RRM
370
436
FNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFPNISQAVLAIMKCNHLPIEGKGTK
Links
Other
RRM
family RBPs
Other
Drosophila willistoni
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH22768
Drosophila grimshawi
FBgn0130225
I
0.979
sm
Drosophila melanogaster
FBgn0003435
D
0.979
GI18546
Drosophila mojavensis
FBgn0141285
I
0.989
GA21622-RA
Drosophila pseudoobscura
FBgn0081607
I
0.821
GJ21415
Drosophila virilis
FBgn0208541
I
0.989
GE13838
Drosophila yakuba
FBgn0231486
I
0.979