CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pg.C_scaffold_24000140
(
Phytophthora ramorum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh1_pg.C_scaffold_24000140
T51854_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_24000140
RRM
267
336
VFVSDLPWGTTKEADVASYFGIAGVVVLVQMPTMTDGSTVGVAVVRFAALEGMTLALRMDGYPFNGKNIR
Links
Other
RRM
family RBPs
Other
Phytophthora ramorum
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_5100003
Phytophthora capsici
estExt_fgenesh1_pg.C_5100003
N
0.900
PITG_07730
Phytophthora infestans
PITG_07730
N
0.929