CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf003371m
(
Mimulus guttatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
mgf003371m
T53606_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf003371m
RRM
140
222
LFVARLNYETTESRIKREFEAYGPIKRVGIMENPQVWGLVRLVTDTESSKPRGYAFIEFVHTRDMKAAYKQADGKKIDNRRVL
Links
Other
RRM
family RBPs
Other
Mimulus guttatus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI3G21360
Brachypodium distachyon
BRADI3G21360
N
0.714
chr4.CM0165.550.nd
Lotus japonicus
chr4.CM0165.550.nd
N
0.726
Medtr8g093540
Medicago truncatula
Medtr8g093540
N
0.714
BGIOSIBCE031073
Oryza indica
BGIOSIBCE031073
N
0.718
LOC_Os10g02630
Oryza sativa
LOC_Os10g02630
N
0.714
29634.m002163
Ricinus communis
29634.m002163
N
0.702
SB01G039540
Sorghum bicolor
Sb01g039540
N
0.714
GSVIVG00018981001
Vitis vinifera
GSVIVG00018981001
N
0.750
GRMZM2G113592
Zea mays
GRMZM2G113592
N
0.714