CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSPATP00004607001
(
Paramecium tetraurelia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSPATP00004607001
T56743_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSPATP00004607001
RRM
27
83
PENLSPEYFGSLLTQYGQVSQVTILNKSLMDYKVLVEMGTPEAAKSAKSFLDQLSSN
GSPATP00004607001
RRM
158
227
NGIKGKNLDAQKLYNIFSNFGNIDKILFIKYNPEQTRLKNFALIKYLKEEYSIFVFENCQKLQFFDSTIS
GSPATP00004607001
RRM
276
343
LHVSNLKKVSSNAETMWDVFSEFGIVEAVKVLNTQFKFMCLVKMENLKQALEVMALMHNEEVDNRNVQ
Links
Other
RRM
family RBPs
Other
Paramecium tetraurelia
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002885747.1
Arabidopsis lyrata
fgenesh2_kg.3__2831__AT2G05160.1
N
0.000
LjSGA_031424.1
Lotus japonicus
LjSGA_031424.1
N
0.000