CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.07.00.83.1
(
Ostreococcus tauri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.07.00.83.1
T56979_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.07.00.83.1
RRM
19
89
LYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAIDVLNFQVINGKPIR
gw1.07.00.83.1
RRM
107
176
IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVY
gw1.07.00.83.1
RRM
197
266
VYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWV
gw1.07.00.83.1
RRM
300
369
LYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLY
Links
Other
RRM
family RBPs
Other
Ostreococcus tauri
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_10300
Micromonas pusilla
estExt_fgenesh1_pg.C_10300
N
0.773
estExt_Genewise_ext.C_Chr_70395
Ostreococcus lucimarinus
estExt_Genewise_ext.C_Chr_70395
N
0.954
gw1.7.667.1
Ostreococcus RCC809
gw1.7.667.1
N
0.943